Package: bdots 2.0.0

Collin Nolte

bdots: Bootstrapped Differences of Time Series

Analyze differences among time series curves with p-value adjustment for multiple comparisons introduced in Oleson et al (2015) <doi:10.1177/0962280215607411>.

Authors:Collin Nolte [aut, cre], Michael Seedorff [aut], Jacob Oleson [aut], Grant Brown [aut], Joseph Cavanaugh [aut], Bob McMurray [aut]

bdots_2.0.0.tar.gz
bdots_2.0.0.zip(r-4.7)bdots_2.0.0.zip(r-4.6)bdots_2.0.0.zip(r-4.5)
bdots_2.0.0.tgz(r-4.6-any)bdots_2.0.0.tgz(r-4.5-any)
bdots_2.0.0.tar.gz(r-4.7-any)bdots_2.0.0.tar.gz(r-4.6-any)
bdots_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
bdots/json (API)
NEWS

# Install 'bdots' in R:

install.packages('bdots', repos = c('https://collinn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/collinn/bdots/issues

Datasets:

ci - Ci dataset
cohort_unrelated - Cohort_unrelated dataset
df_cohort_unrelated - Df_cohort_unrelated dataset
df_target - Df_target dataset
target - Target dataset

On CRAN:

5.65 score 2 stars 112 scripts 329 downloads 22 exports 22 dependencies

Last updated from:dbf5da1916. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	137
source / vignettes	OK	221
linux-release-x86_64	NOTE	140
macos-release-arm64	NOTE	192
macos-oldrel-arm64	NOTE	207
windows-devel	NOTE	104
windows-release	NOTE	100
windows-oldrel	NOTE	92
wasm-release	OK	97

Exports:ar1Solver bboot bcorr bdotsBoot bdotsCorr bdotsFit bdotsRefit bdRemove bfit brbindlist brefit coefWriteout doubleGauss doubleGauss_sac doubleGauss2 expCurve linear logistic logistic_sac p_adjust polynomial writeCSV

Dependencies:cli cpp11 data.table farver ggplot2 glue gridExtra gtable isoband labeling lattice lifecycle mvtnorm nlme R6 RColorBrewer rlang S7 scales vctrs viridisLite withr

bdots

Rendered frombdots.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2025-07-16
Started: 2020-10-09

Correlation Function

Rendered fromcorrelations.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2025-07-16
Started: 2022-03-10

Refit with Saved Parameters

Rendered fromrefitCoef.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2025-07-16
Started: 2021-03-24

User Curve Functions

Rendered fromcustomCurves.Rmdusingknitr::rmarkdownon May 12 2026.

Last update: 2025-07-16
Started: 2021-03-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Compute AR1 correlation coefficient	ar1Solver
Create bootstrapped curves from bdotsObj	bboot
Correlation with fixed value in bdots	bcorr
Create bootstrapped curves from bdotsObj	bdotsBoot
Correlation with fixed value in bdots	bdotsCorr
Fit nlme curves to grouped observations	bdotsFit
Fits Individual Subject Curve	bdotsFitter
Refit Observations Returned from bdotsFit	bdotsRefit
bdots Remove Function	bdRemove
Fit nlme curves to grouped observations	bfit
Need to turn T/F into indices and I think I have an idea how	bool2idx
Rbindlist for bdots objects	brbindlist
Refit Observations Returned from bdotsFit	brefit
ci dataset	ci
Extract bdotsFit Moedel Coefficients	coef.bdotsObj
Create 'data.table' with 'bdotsObj' parameters	coefWriteout
cohort_unrelated dataset	cohort_unrelated
Create old bdots curve list	createCurveList
Create bootstrapped distribution of groups	createGroupDists
Curve Fitter	curveFitter
df_cohort_unrelated dataset	df_cohort_unrelated
df_target dataset	df_target
Double Gauss curve function for nlme	doubleGauss
Double Gauss curve function for nlme	doubleGauss_sac
DoubleGauss2 curve function for nlme	doubleGauss2
Effective Alpha Functional	effectiveAlpha_f
Exponential curve function	expCurve
Find modified alpha	findModifiedAlpha
fwerAlpha	fwerAlpha
Create distribution for paired groups	getBootDistPaired
Create Distribution for Groups	getBootDistUnpaired
Get Fit Correlations	getFitCorforGroups
Return fitted values	getSubCurveValues
Generate t-distribution for permutation	getT
Get null distribution of permutation	getTDist
Difference of difference pairing	isDODpaired
Linear curve function	linear
Logistic curve function for nlme	logistic
Logistic saccade curve function for nlme	logistic_sac
Adjust P-values for Multiple Comparisons	p_adjust
Parameter t-test	parTest2
Permutation testing for bboot	permTest
Plot for object of class bdotsBootObj	plot.bdotsBootObj
Plots for bdotsCorr	plot.bdotsCorrObj
Plot a bdotsFit object	plot.bdotsObj
Polynomial curve function for nlme	polynomial
Print `bdotsBootObj`	print.bdotsBootObj
Print bdotsBoot Summary	print.bdotsBootSummary
Print Parameter Test Summary	print.bdotsPars_ttest2
Print bdotsObj Summary	print.bdotsSummary
Split object of class bdotsObj	split.bdotsObj
Subset a nested group bdotsBoot objects	subset.bdotsBootObj
Summary for bdotsBootObj	summary.bdotsBootObj
Summary for bdotsObj	summary.bdotsObj
target dataset	target
Write fits from 'bdotsBoot' to csv file	writeCSV