Package: bdots 2.0.0

Collin Nolte

bdots: Bootstrapped Differences of Time Series

Analyze differences among time series curves with p-value adjustment for multiple comparisons introduced in Oleson et al (2015) <doi:10.1177/0962280215607411>.

Authors:Collin Nolte [aut, cre], Michael Seedorff [aut], Jacob Oleson [aut], Grant Brown [aut], Joseph Cavanaugh [aut], Bob McMurray [aut]

bdots_2.0.0.tar.gz
bdots_2.0.0.zip(r-4.7-any)bdots_2.0.0.zip(r-4.6-any)bdots_2.0.0.zip(r-4.5-any)
bdots_2.0.0.tgz(r-4.6-any)bdots_2.0.0.tgz(r-4.5-any)
bdots_2.0.0.tar.gz(r-4.7-any)bdots_2.0.0.tar.gz(r-4.6-any)
bdots_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bdots/json (API)

# Install 'bdots' in R:
install.packages('bdots', repos = c('https://collinn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/collinn/bdots/issues

Datasets:

On CRAN:

Conda:

5.70 score 2 stars 125 scripts 438 downloads 22 exports 22 dependencies

Last updated from:dbf5da1916. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE123
source / vignettesOK268
linux-releaseNOTE117
macos-releaseNOTE172
macos-oldrelNOTE199
windows-develNOTE87
windows-releaseNOTE91
windows-oldrelNOTE83
wasm-releaseOK84

Exports:ar1SolverbbootbcorrbdotsBootbdotsCorrbdotsFitbdotsRefitbdRemovebfitbrbindlistbrefitcoefWriteoutdoubleGaussdoubleGauss_sacdoubleGauss2expCurvelinearlogisticlogistic_sacp_adjustpolynomialwriteCSV

Dependencies:clicpp11data.tablefarverggplot2gluegridExtragtableisobandlabelinglatticelifecyclemvtnormnlmeR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

bdots
Overview | Fitting Step | Refitting Step | Bootstrap
Rendered frombdots.Rmdusingknitr::rmarkdown

Last update: 2025-07-16
Started: 2020-10-09

Correlation Function
Correlations in bdots
Rendered fromcorrelations.Rmdusingknitr::rmarkdown

Last update: 2025-07-16
Started: 2022-03-10

Refit with Saved Parameters
Overview
Rendered fromrefitCoef.Rmdusingknitr::rmarkdown

Last update: 2025-07-16
Started: 2021-03-24

User Curve Functions
Rendered fromcustomCurves.Rmdusingknitr::rmarkdown

Last update: 2025-07-16
Started: 2021-03-02

Readme and manuals

Help Manual

Help pageTopics
Compute AR1 correlation coefficientar1Solver
Create bootstrapped curves from bdotsObjbboot
Correlation with fixed value in bdotsbcorr
Create bootstrapped curves from bdotsObjbdotsBoot
Correlation with fixed value in bdotsbdotsCorr
Fit nlme curves to grouped observationsbdotsFit
Fits Individual Subject CurvebdotsFitter
Refit Observations Returned from bdotsFitbdotsRefit
bdots Remove FunctionbdRemove
Fit nlme curves to grouped observationsbfit
Need to turn T/F into indices and I think I have an idea howbool2idx
Rbindlist for bdots objectsbrbindlist
Refit Observations Returned from bdotsFitbrefit
ci datasetci
Extract bdotsFit Moedel Coefficientscoef.bdotsObj
Create 'data.table' with 'bdotsObj' parameterscoefWriteout
cohort_unrelated datasetcohort_unrelated
Create old bdots curve listcreateCurveList
Create bootstrapped distribution of groupscreateGroupDists
Curve FittercurveFitter
df_cohort_unrelated datasetdf_cohort_unrelated
df_target datasetdf_target
Double Gauss curve function for nlmedoubleGauss
Double Gauss curve function for nlmedoubleGauss_sac
DoubleGauss2 curve function for nlmedoubleGauss2
Effective Alpha FunctionaleffectiveAlpha_f
Exponential curve functionexpCurve
Find modified alphafindModifiedAlpha
fwerAlphafwerAlpha
Create distribution for paired groupsgetBootDistPaired
Create Distribution for GroupsgetBootDistUnpaired
Get Fit CorrelationsgetFitCorforGroups
Return fitted valuesgetSubCurveValues
Generate t-distribution for permutationgetT
Get null distribution of permutationgetTDist
Difference of difference pairingisDODpaired
Linear curve functionlinear
Logistic curve function for nlmelogistic
Logistic saccade curve function for nlmelogistic_sac
Adjust P-values for Multiple Comparisonsp_adjust
Parameter t-testparTest2
Permutation testing for bbootpermTest
Plot for object of class bdotsBootObjplot.bdotsBootObj
Plots for bdotsCorrplot.bdotsCorrObj
Plot a bdotsFit objectplot.bdotsObj
Polynomial curve function for nlmepolynomial
Print `bdotsBootObj`print.bdotsBootObj
Print bdotsBoot Summaryprint.bdotsBootSummary
Print Parameter Test Summaryprint.bdotsPars_ttest2
Print bdotsObj Summaryprint.bdotsSummary
Split object of class bdotsObjsplit.bdotsObj
Subset a nested group bdotsBoot objectssubset.bdotsBootObj
Summary for bdotsBootObjsummary.bdotsBootObj
Summary for bdotsObjsummary.bdotsObj
target datasettarget
Write fits from 'bdotsBoot' to csv filewriteCSV