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  "Package": "bdots",
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  "Title": "Bootstrapped Differences of Time Series",
  "Version": "2.0.0",
  "Date": "2025-7-15",
  "Authors@R": "c(\nperson(\"Collin\", \"Nolte\", email = \"noltecollin@grinnell.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Michael\", \"Seedorff\", role = \"aut\"),\nperson(\"Jacob\", \"Oleson\", role = \"aut\"),\nperson(\"Grant\", \"Brown\", role = \"aut\"),\nperson(\"Joseph\", \"Cavanaugh\", role = \"aut\"),\nperson(\"Bob\", \"McMurray\", role = \"aut\"))",
  "BugReports": "https://github.com/collinn/bdots/issues",
  "LazyData": "TRUE",
  "Description": "Analyze differences among time series curves with p-value\nadjustment for multiple comparisons introduced in Oleson et al\n(2015) <DOI:10.1177/0962280215607411>.",
  "License": "GPL-3",
  "URL": "https://github.com/collinn/bdots",
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  "Encoding": "UTF-8",
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  "Author": "Collin Nolte [aut, cre],\nMichael Seedorff [aut],\nJacob Oleson [aut],\nGrant Brown [aut],\nJoseph Cavanaugh [aut],\nBob McMurray [aut]",
  "Maintainer": "Collin Nolte <noltecollin@grinnell.edu>",
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    "message": "Merge pull request #33 from collinn/dev\n\nTransition master branch to bdots 2.0.0",
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    "extra/readme.html",
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  "_homeurl": "https://github.com/collinn/bdots",
  "_realowner": "collinn",
  "_cranurl": true,
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      "date": "2015-09-21"
    },
    {
      "version": "0.1.2",
      "date": "2015-09-25"
    },
    {
      "version": "0.1.4",
      "date": "2016-01-26"
    },
    {
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    },
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      "date": "2018-03-12"
    },
    {
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      "date": "2021-03-05"
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    },
    {
      "version": "2.0.0",
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  "_exports": [
    "ar1Solver",
    "bboot",
    "bcorr",
    "bdotsBoot",
    "bdotsCorr",
    "bdotsFit",
    "bdotsRefit",
    "bdRemove",
    "bfit",
    "brbindlist",
    "brefit",
    "coefWriteout",
    "doubleGauss",
    "doubleGauss_sac",
    "doubleGauss2",
    "expCurve",
    "linear",
    "logistic",
    "logistic_sac",
    "p_adjust",
    "polynomial",
    "writeCSV"
  ],
  "_datasets": [
    {
      "name": "ci",
      "title": "ci dataset",
      "object": "ci",
      "class": [
        "data.frame"
      ],
      "fields": [
        "protocol",
        "Subject",
        "Time",
        "Fixations",
        "LookType"
      ],
      "rows": 108216,
      "table": true,
      "tojson": true
    },
    {
      "name": "cohort_unrelated",
      "title": "cohort_unrelated dataset",
      "object": "demo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Subject",
        "Time",
        "DB_cond",
        "Fixations",
        "LookType",
        "Group"
      ],
      "rows": 50100,
      "table": true,
      "tojson": true
    },
    {
      "name": "df_cohort_unrelated",
      "title": "df_cohort_unrelated dataset",
      "object": "demo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "subjectID",
        "trialcodecond",
        "Time",
        "AvgOfCohort",
        "Group"
      ],
      "rows": 78156,
      "table": true,
      "tojson": true
    },
    {
      "name": "df_target",
      "title": "df_target dataset",
      "object": "demo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "subjectID",
        "trialcodecond",
        "Time",
        "AvgOfTarget"
      ],
      "rows": 37575,
      "table": true,
      "tojson": true
    },
    {
      "name": "target",
      "title": "target dataset",
      "object": "demo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Subject",
        "Group",
        "Time",
        "AvgOfTarget"
      ],
      "rows": 25050,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "ar1Solver",
      "title": "Compute AR1 correlation coefficient",
      "topics": [
        "ar1Solver"
      ]
    },
    {
      "page": "bboot",
      "title": "Create bootstrapped curves from bdotsObj",
      "topics": [
        "bboot"
      ]
    },
    {
      "page": "bcorr",
      "title": "Correlation with fixed value in bdots",
      "topics": [
        "bcorr"
      ]
    },
    {
      "page": "bdotsBoot",
      "title": "Create bootstrapped curves from bdotsObj",
      "topics": [
        "bdotsBoot"
      ]
    },
    {
      "page": "bdotsCorr",
      "title": "Correlation with fixed value in bdots",
      "topics": [
        "bdotsCorr"
      ]
    },
    {
      "page": "bdotsFit",
      "title": "Fit nlme curves to grouped observations",
      "topics": [
        "bdotsFit"
      ]
    },
    {
      "page": "bdotsFitter",
      "title": "Fits Individual Subject Curve",
      "topics": [
        "bdotsFitter"
      ]
    },
    {
      "page": "bdotsRefit",
      "title": "Refit Observations Returned from bdotsFit",
      "topics": [
        "bdotsRefit"
      ]
    },
    {
      "page": "bdRemove",
      "title": "bdots Remove Function",
      "topics": [
        "bdRemove"
      ]
    },
    {
      "page": "bfit",
      "title": "Fit nlme curves to grouped observations",
      "topics": [
        "bfit"
      ]
    },
    {
      "page": "bool2idx",
      "title": "Need to turn T/F into indices and I think I have an idea how",
      "topics": [
        "bool2idx"
      ]
    },
    {
      "page": "brbindlist",
      "title": "Rbindlist for bdots objects",
      "topics": [
        "brbindlist"
      ]
    },
    {
      "page": "brefit",
      "title": "Refit Observations Returned from bdotsFit",
      "topics": [
        "brefit"
      ]
    },
    {
      "page": "ci",
      "title": "ci dataset",
      "topics": [
        "ci"
      ]
    },
    {
      "page": "coef.bdotsObj",
      "title": "Extract bdotsFit Moedel Coefficients",
      "topics": [
        "coef.bdotsObj"
      ]
    },
    {
      "page": "coefWriteout",
      "title": "Create 'data.table' with 'bdotsObj' parameters",
      "topics": [
        "coefWriteout"
      ]
    },
    {
      "page": "cohort_unrelated",
      "title": "cohort_unrelated dataset",
      "topics": [
        "cohort_unrelated"
      ]
    },
    {
      "page": "createCurveList",
      "title": "Create old bdots curve list",
      "topics": [
        "createCurveList"
      ]
    },
    {
      "page": "createGroupDists",
      "title": "Create bootstrapped distribution of groups",
      "topics": [
        "createGroupDists"
      ]
    },
    {
      "page": "curveFitter",
      "title": "Curve Fitter",
      "topics": [
        "curveFitter"
      ]
    },
    {
      "page": "df_cohort_unrelated",
      "title": "df_cohort_unrelated dataset",
      "topics": [
        "df_cohort_unrelated"
      ]
    },
    {
      "page": "df_target",
      "title": "df_target dataset",
      "topics": [
        "df_target"
      ]
    },
    {
      "page": "doubleGauss",
      "title": "Double Gauss curve function for nlme",
      "topics": [
        "doubleGauss"
      ]
    },
    {
      "page": "doubleGauss_sac",
      "title": "Double Gauss curve function for nlme",
      "topics": [
        "doubleGauss_sac"
      ]
    },
    {
      "page": "doubleGauss2",
      "title": "DoubleGauss2 curve function for nlme",
      "topics": [
        "doubleGauss2"
      ]
    },
    {
      "page": "effectiveAlpha_f",
      "title": "Effective Alpha Functional",
      "topics": [
        "effectiveAlpha_f"
      ]
    },
    {
      "page": "expCurve",
      "title": "Exponential curve function",
      "topics": [
        "expCurve"
      ]
    },
    {
      "page": "findModifiedAlpha",
      "title": "Find modified alpha",
      "topics": [
        "findModifiedAlpha"
      ]
    },
    {
      "page": "fwerAlpha",
      "title": "fwerAlpha",
      "topics": [
        "fwerAlpha"
      ]
    },
    {
      "page": "getBootDistPaired",
      "title": "Create distribution for paired groups",
      "topics": [
        "getBootDistPaired"
      ]
    },
    {
      "page": "getBootDistUnpaired",
      "title": "Create Distribution for Groups",
      "topics": [
        "getBootDistUnpaired"
      ]
    },
    {
      "page": "getFitCorforGroups",
      "title": "Get Fit Correlations",
      "topics": [
        "getFitCorforGroups"
      ]
    },
    {
      "page": "getSubCurveValues",
      "title": "Return fitted values",
      "topics": [
        "getSubCurveValues"
      ]
    },
    {
      "page": "getT",
      "title": "Generate t-distribution for permutation",
      "topics": [
        "getT"
      ]
    },
    {
      "page": "getTDist",
      "title": "Get null distribution of permutation",
      "topics": [
        "getTDist"
      ]
    },
    {
      "page": "isDODpaired",
      "title": "Difference of difference pairing",
      "topics": [
        "isDODpaired"
      ]
    },
    {
      "page": "linear",
      "title": "Linear curve function",
      "topics": [
        "linear"
      ]
    },
    {
      "page": "logistic",
      "title": "Logistic curve function for nlme",
      "topics": [
        "logistic"
      ]
    },
    {
      "page": "logistic_sac",
      "title": "Logistic saccade curve function for nlme",
      "topics": [
        "logistic_sac"
      ]
    },
    {
      "page": "p_adjust",
      "title": "Adjust P-values for Multiple Comparisons",
      "topics": [
        "p_adjust"
      ]
    },
    {
      "page": "parTest2",
      "title": "Parameter t-test",
      "topics": [
        "parTest2"
      ]
    },
    {
      "page": "permTest",
      "title": "Permutation testing for bboot",
      "topics": [
        "permTest"
      ]
    },
    {
      "page": "plot.bdotsBootObj",
      "title": "Plot for object of class bdotsBootObj",
      "topics": [
        "plot.bdotsBootObj"
      ]
    },
    {
      "page": "plot.bdotsCorrObj",
      "title": "Plots for bdotsCorr",
      "topics": [
        "plot.bdotsCorrObj"
      ]
    },
    {
      "page": "plot.bdotsObj",
      "title": "Plot a bdotsFit object",
      "topics": [
        "plot.bdotsObj"
      ]
    },
    {
      "page": "polynomial",
      "title": "Polynomial curve function for nlme",
      "topics": [
        "polynomial"
      ]
    },
    {
      "page": "print.bdotsBootObj",
      "title": "Print `bdotsBootObj`",
      "topics": [
        "print.bdotsBootObj"
      ]
    },
    {
      "page": "print.bdotsBootSummary",
      "title": "Print bdotsBoot Summary",
      "topics": [
        "print.bdotsBootSummary"
      ]
    },
    {
      "page": "print.bdotsPars_ttest2",
      "title": "Print Parameter Test Summary",
      "topics": [
        "print.bdotsPars_ttest2"
      ]
    },
    {
      "page": "print.bdotsSummary",
      "title": "Print bdotsObj Summary",
      "topics": [
        "print.bdotsSummary"
      ]
    },
    {
      "page": "split.bdotsObj",
      "title": "Split object of class bdotsObj",
      "topics": [
        "split.bdotsObj"
      ]
    },
    {
      "page": "subset.bdotsBootObj",
      "title": "Subset a nested group bdotsBoot objects",
      "topics": [
        "subset.bdotsBootObj"
      ]
    },
    {
      "page": "summary.bdotsBootObj",
      "title": "Summary for bdotsBootObj",
      "topics": [
        "summary.bdotsBootObj"
      ]
    },
    {
      "page": "summary.bdotsObj",
      "title": "Summary for bdotsObj",
      "topics": [
        "summary.bdotsObj"
      ]
    },
    {
      "page": "target",
      "title": "target dataset",
      "topics": [
        "target"
      ]
    },
    {
      "page": "writeCSV",
      "title": "Write fits from 'bdotsBoot' to csv file",
      "topics": [
        "writeCSV"
      ]
    }
  ],
  "_readme": "https://github.com/collinn/bdots/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "data.table",
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    "gridExtra",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "mvtnorm",
    "nlme",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
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      "source": "bdots.Rmd",
      "filename": "bdots.html",
      "title": "bdots",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Fitting Step",
        "Refitting Step",
        "Bootstrap"
      ],
      "created": "2020-10-09 23:03:17",
      "modified": "2025-07-16 15:22:10",
      "commits": 6
    },
    {
      "source": "correlations.Rmd",
      "filename": "correlations.html",
      "title": "Correlation Function",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Correlations in bdots"
      ],
      "created": "2022-03-10 19:01:30",
      "modified": "2025-07-16 15:22:10",
      "commits": 5
    },
    {
      "source": "refitCoef.Rmd",
      "filename": "refitCoef.html",
      "title": "Refit with Saved Parameters",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview"
      ],
      "created": "2021-03-24 17:10:55",
      "modified": "2025-07-16 15:22:10",
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    },
    {
      "source": "customCurves.Rmd",
      "filename": "customCurves.html",
      "title": "User Curve Functions",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2021-03-02 22:49:21",
      "modified": "2025-07-16 15:22:10",
      "commits": 5
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  "_score": 5.698970004336019,
  "_indexed": true,
  "_nocasepkg": "bdots",
  "_universes": [
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      "fileid": "https://r2.ropensci.org/4a709fa9db1fdfbe60f25c71d53c0ce44188f9149c74460cd7d78b16204f109a",
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